James Sharpe

James Sharpe

Centre de Regulació Genòmica

Life & Medical Sciences

1997: PhD in Genetics & Development, MRC National Institute for Medical Research, London, UK ("Cis-regulatory mechanisms of the Hox genes in mouse development") 1997-1998: Postdoc. Fellow on Xenopus development, University of Chile. 1998-2000: Postdoc. Fellow, MRC Human Genetics Unit, Edinburgh, UK (computational approaches to study mouse limb development) 2001: Development of a 3D optical imaging technique and introduction of the term "Optical Projection Tomography", commercialized under the name Bioptonics.  2002-2006: Tenure-track Group Leader, MRC Human Genetics Unit, Edinburgh, UK. 2006: Senior Group Leader at the CRG  and  ICREA Research Professor, Barcelona, Spain 2011-2017: Coordinator of the CRG Systems Biology Program. 2017: Head of  EMBL Barcelona (Tissue Biology & Disease Modelling Unit) and  Senior Scientist (Sharpe Group: Multicellular systems biology), Barcelona, Spain


Research interests

The physical complexity of a human being, or even a single organ, is truly astounding. The goal of my lab is to understand how the activities of gene networks controls the millions of cells which make up our organs – allowing them to communicate with each other, to decide what to do at each moment during embryo development: whether to divide, which way to move, and which cells types to become (cartilage, bone, connective tissue, etc.) We believe this will only be achieved by integrating information into a computer model, and to this end we are developing new imaging and computational methods to understand one example of organogenesis – vertebrate limb development. We combine various systems biology approaches to integrate data on cell activities and gene networks into a realistic 4D computer simulation of the process. This is a truly interdisciplinary endeavour, and the lab is therefore composed of physicists, engineers and computer scientists as well as biologists.

Selected publications

- Cotterell J, Vila-Cejudo M, Batlle-Morera L & Sharpe J 2020, 'Endogenous CRISPR/Cas9 arrays for scalable whole-organism lineage tracing', Development (Cambridge, England), 147, 9.

- Llambrich S, Wouters J, Himmelreich U, Dierssen M, Sharpe J, Gsell W, Martinez-Abadias N & Vande Velde G 2020, 'ViceCT and whiceCT for simultaneous high-resolution visualization of craniofacial, brain and ventricular anatomy from micro-computed tomography', Scientific Reports, 10, 1, 18772.

- Llambrich S, Wouters J, Himmelreich U, Dierssen M, Sharpe J, Gsell W, Martínez-Abadías N, Vande Velde G 2020, 'ViceCT and whiceCT for simultaneous high-resolution visualization of craniofacial, brain and ventricular anatomy from micro-computed tomography'. Sci Rep 10(1):18772.  

- Stolp B, Thelen F, Ficht X, Altenburger LM, Ruef N, Inavalli VVGK, Germann P, Page N, Moalli F, Raimondi A, Keyser KA, Jafari SMS, Barone F, Dettmer MS, Merkler D, Sharpe J, Iannacone M, Fackler OT, Schlapbach C, Stein JV & Nägerl UV 2020, 'Salivary gland macrophages and tissue-resident CD8+ T cells cooperate for homeostatic organ surveillance.Sci Immunol 5(46) eaaz4371. 


Selected research activities

IDIBAPS Seminar (Brief introduction to EMBL-BCN: Tissue Biology and Disease Modelling )

Predoc Course, EMBL International PhD Programme (Computational Modelling of Developing Organs), Heidelberg, Germany

Online Summer School "Modeling Shape and Size in Biological Development” at the Lorentz Center, Math Leiden University

Stem Cells @ Lunch Digested at Kings College (London) - podcast

EMBL-IBEC Winter Conference on Engineering Multicellular Systems co-organiser.