Toni Gabaldón Estevan

Toni Gabaldón Estevan

Barcelona Supercomputing Center - Centro Nacional de Supercomputación & Institut de Recerca Biomèdica

Life & Medical Sciences

I'm a biochemist and molecular biologist by training. I obtained a PhD in Medical Sciences in 2005 (Radbout University Nijmegen). I was an EMBO postodoctoral fellow at the CIPF (Valencia) before starting my own group at the Bioinformatics and Genomics Department at the CRG (Barcelona, 2008-2019). In 2019 I joined as a Senior group leader the IRB and the BSC (Barcelona). I am ICREA Research professor since 2013 and EMBO member since 2021. I have been awardee of the ERC starting and consolidator grants and received awards such as the Margaret Dayhoff mid-career award (2017), correspondent membership of the Spanish Royal National Academy of Pharmacy, and membership of the Spanish Young Academy. I have co-authored over 250 articles, and founded one spin-off company. I have always used an evolutionary perspective to address different biological questions. I am not only interested in understanding how complex biological systems work, but also how they have come to be as they are.

Research interests

My main research interest is to understand the complex relationships between genome sequences and phenotypes and how these two features evolve within and across species. I generally use large-scale phylogenetics and molecular evolution approaches that allow looking at the evolution of genomes from the perspective of all of their genes, and apply these analyses to a variety of biological questions related to the evolution and function of biological communities, organisms, organelles, pathways, and families of protein-coding and non-coding genes. I have a special interest in understanding processes related to human pathogenesis. Through collaborations with experimental groups, I apply comparative genomics to discover new mechanisms and genes involved in interesting processes, especially those of clinical relevance. Given our exposure to new types and scales of data, my group has had the need to develop novel bioinformatics tools to fill in existing gaps.

Selected publications

– Schikora-Tamarit MA & Gabaldón T 2024, ‘Recent gene selection and drug resistance underscore clinical adaptation across Candida species‘, Nature microbiology, 9 – 284-307.
– Marcet Houben M, Cruz F, Gómez Garrido J, Alioto T, Nuñez Rodriguez JC, Mesanza N, Gut M, Iturritxa E, Gabaldon T, 2024, “Genomics of the expanding pine pathogen Lecanosticta acicola reveals patterns of ongoing genetic admixturemSystems, Vol 9 Issue 3 e00928-23
Bernabeu M, Manzano-Morales S & Gabaldón T 2024, ‘On the impact of incomplete taxon sampling on the relative timing of gene transfer events‘. PLoS Biol. 22 – 3 – e3002460.
– Ahaik I, Nunez-Rodríguez JC, Abrini J, Bouhdid S & Gabaldón T 2024, ‘Assessing Diagnosis of Candida Infections: A Study on Species Prevalence and Antifungal Resistance in Northern Morocco‘, Journal of fungi, 10 – 6.
– Chorostecki U, Saus E & Gabaldón T 2024, ‘Probing RNA structural landscapes across Candida yeast genomes‘, Frontiers in microbiology, 15 -1362067.
– Ksiezopolska E, Schikora-Tamarit MA, Nunez-Rodriguez JC & Gabaldón T 2024, ‘Long-term stability of acquired drug resistance and resistance associated mutations in the fungal pathogen Nakaseomyces glabratus (Candida glabrata)‘, Frontiers in cellular and infection microbiology, 14 -1416509.
– del Olmo V & Gabaldon T 2024, ‘Hybrids unleashed: exploring the emergence and genomic insights of pathogenic yeast hybrids‘, Current opinion in microbiology, 80 -102491.
– Carolus H, Sofras D, Boccarella G, Jacobs S, Biriukov V, Goossens L, Chen A, Vantyghem I, Verbeeck T, Pierson S, Romero CL, Steenackers H, Lagrou K, van den Berg P, Berman J, Gabaldón T & Van Dijck P 2024, ‘Collateral sensitivity counteracts the evolution of antifungal drug resistance in Candida auris‘, Nature microbiology, 9 – 11.
– Marcet-Houben M, Ksiezopolska E & Gabaldón T 2024, ‘Chromosome level assemblies of Nakaseomyces (Candida) bracarensis uncover two distinct clades and define its adhesin repertoire‘, Bmc genomics, 25 – 1 -1053.