Manuel Irimia

Manuel Irimia

Universitat Pompeu Fabra

Life & Medical Sciences

Manuel Irimia obtained his PhD in 2010 at University of Barcelona investigating the origin of vertebrates at a genomic level. After two postdocs at Stanford University and University of Toronto, he joined the Centre for Genomic Regulation (CRG) in June 2014. He has been elected EMBO Young Investigator (2018) and obtained ERC Starting (2014) and Consolidator (2020) Grants.

Research interests

Manuel Irimia's research is centered on two major questions: How does a single genome sequence encode the information to build the enormous complexity of cell types and structures of an adult organism? How are changes in this sequence translated into morphological novelties during evolution? In his lab, they approach these topics focusing on cell and tissue type specific transcriptomes: How are they encoded in the genome? How are they generated during embryogenesis? How do they impact cell function in adult organisms? How do they evolve and how they impact evolution? To answer these questions, they not only study transcriptional regulation, but also other mechanisms that expand transcriptomic diversity, such as alternative splicing and gene duplication, combining computational and experimental approaches using in vitro and in vivo systems (zebrafish, mouse and fruitfly)

Selected publications

- Juan-Mateu J, Bajew S, Miret-Cuesta M, et al. 2023, 'Pancreatic microexons regulate islet function and glucose homeostasis', Nature Metabolism, 5, 2, 219-236
- Gohr A, Iñiguez LP, Torres-Méndez A, Bonnal S & Irimia M 2023, 'Insplico: effective computational tool for studying splicing order of adjacent introns genome-wide with short and long RNA-seq reads', Nucleic Acids Research, 51, 10, e56.
- Wucher V, Sodaei R, Amador R, Irimia M & Guigó R 2023, 'Day-night and seasonal variation of human gene expression across tissues', Plos Biology, 21, 2, e3001986.

Selected research activities

Grants and awards:
  • FFB Individual Investigator Research Grant.
  • Beca Leonardo a Investigadores y Creadores Culturales BBVA.
  • V Research Award "Fundación Jesús Serra".

Thesis defended:
  • Ludovica Ciampi (co-supervised with Luis Serrano).
  • Federica Mantica.